SNP Profiles of AMAZ 3/2 [CHA]   View Data

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 Key

 1234567891011121314
_Input profile
TTCCAAGTCCGGAAGGAAGGGGATCCCC
1._AMAZ_3_/2
__AAGTCC_AAGGAA__ATCCCC
2._AMAZ_3_/2
__AAGTCC_AAGGAA__ATCCCC
3._AMAZ_3_/2
__AAGTCC_AAGGAA__ATCCCC
4._AMAZ_3_/2
__AAGTCC_AAGGAA__ATCCCC
5._AMAZ_3_/2
__AAGTCC_AAGGAA__ATCCCC
6._AMAZ_3_/2
__AAGTCC_AAGGAA__ATCCCC
7._AMAZ_3_/2
__AAGTCC_AAGGAA__ATCCCC
8._AMAZ_3_/2
__AAGTCC_AAGGAA__ATCCCC
9._AMAZ_3_/2
__AAGTCC_AAGGAA__ATCCCC
10._AMAZ_3_/2
__AAGT__AAGGAA__ATCCCC
11._AMAZ_3_/2
__AAGTCC_AAGGAA__ATCCCC
12._RUQ_91
__AA_____AAGG__CC_
13._GC-03-022-2-11
TTCCAAGTCCGGAAGGAAGGGGATCCCC
14._GC-03-022-2-11
TTCCAAGTCCGGAAGGAAGGGGATCCCC
15._GC-03-022-2-11
TTCCAAGTCCGGAAGGAAGGGGATCCCC
16._GC-03-022-2-11
TTCCAAGTCCGGAAGGAAGGGGATCCCC
17._GC-03-022-2-11
TTCCAAGTCCGGAAGGAAGGGGATCCCC
18._GC-03-022-2-11
TTCCAAGTCCGGAAGGAAGGGGATCCCC
19._GC-03-022-2-11
TTCCAAGTCCGGAAGGAAGGGGATCCCC
20._GC-03-022-2-11
TTCCAAGTCCGGAAGGAAGGGGATCCCC
21._GC-03-022-2-11
TTCCAAGT_GGAAGGAAGGGGATCCCC
22._GC-03-022-2-11
TTCCAAGTCCGGAAGGAAGGGGATCCCC
23._RUQ_91
__AAGTCC_AAGGAA__ATCCCC
24._GC-03-022-2-11
TTCCACGGCTGGACCCGGGGGGATCCCT
25._GC-03-022-2-11
TTCCACGGCTGGACCCGGGGGGATCCCT
26._GC-03-022-2-11
TTCCACGGCTGGACCCGGGGGGATCCCT
27._GC-03-022-2-11
TTCCACGGCTGGACCCGGGGGGATCCCT
28._AMAZ_3_/2
__ACGGCT_ACCCGG__ATCCCT
29._AMAZ_3_/2
__ACGGCT_ACCCGG__ATCCCT
30._AMAZ_3_/2
__ACGGCT_ACCCGG__ATCCCT
31._AMAZ_3_/2
__ACGGCT_ACCCGG__ATCCCT
32._RUQ_91
AACCAAACGGGGAACCAAGGGGATCC_
 1516171819202122232425262728
_Input profile
CCAATTCCTTGTTTCGCCAACCGGAATT
1._AMAZ_3_/2
CCAA_CC_GT__CCAACC___
2._AMAZ_3_/2
_AA_CC_GT__CCAACC___
3._AMAZ_3_/2
_AA_CC_GT__CCAACC___
4._AMAZ_3_/2
_AA_CC_GT__CCAACC___
5._AMAZ_3_/2
_AA_CC_GT__CCAACC___
6._AMAZ_3_/2
_AA_CC_GT__CCAACC___
7._AMAZ_3_/2
_AA_CC_GT__CCAACC___
8._AMAZ_3_/2
_AA_CC_GT__CCAACC___
9._AMAZ_3_/2
_AA_CC_GT__CCAACC___
10._AMAZ_3_/2
_AA_CC_GT__CCAACC___
11._AMAZ_3_/2
_AA_CC_GT__CCAACC___
12._RUQ_91
_AATT_TTGT___AA____
13._GC-03-022-2-11
_AATTCCTTGTTTCGCCAACCGGGGTT
14._GC-03-022-2-11
_AATTCCTTGTTTCGCCAACCGGGGTT
15._GC-03-022-2-11
_AATTCCTTGTTTCGCCAACCGGGGTT
16._GC-03-022-2-11
_AATTCCTTGTTTCGCCAACCGGGGTT
17._GC-03-022-2-11
_AATTCCTTGTTTCGCCAACCGGGGTT
18._GC-03-022-2-11
_AATTCCTTGTTTCGCCAACCGGGGTT
19._GC-03-022-2-11
_AATTCCTTGTTTCGCCAACCGGGGTT
20._GC-03-022-2-11
_AATTCCTTGTTTCGCCAACCGGGGTT
21._GC-03-022-2-11
_AATTCCTTGTTTCGCCAACCGGGGTT
22._GC-03-022-2-11
_AATTCCTTGTTTCGCCAACCGGGGTT
23._RUQ_91
CCAA_CC_GT__CCAACT___
24._GC-03-022-2-11
GGACCCCTCTGGTTCGCTAGCCGGAGTT
25._GC-03-022-2-11
GGACCCCTCTGGTTCGCTAGCCGGAGTT
26._GC-03-022-2-11
GGACCCCTCTGGTTCGCTAGCCGGAGTT
27._GC-03-022-2-11
GGACCCCTCTGGTTCGCTAGCCGGAGTT
28._AMAZ_3_/2
GGAC_CT_GG__CTAGCC___
29._AMAZ_3_/2
GGAC_CT_GG__CTAGCC___
30._AMAZ_3_/2
GGAC_CT_GG__CTAGCC___
31._AMAZ_3_/2
GGAC_CT_GG__CTAGCC___
32._RUQ_91
CCAAAAGG_ACAA_GGAAGGCCGG_
 29303132          
_Input profile
TTTTCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._AMAZ_3_/2
TT_CCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._AMAZ_3_/2
TT_CCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._AMAZ_3_/2
TT_CCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._AMAZ_3_/2
TT_CCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._AMAZ_3_/2
TT_CCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._AMAZ_3_/2
TT_CCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._AMAZ_3_/2
TT_CCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._AMAZ_3_/2
TT_CCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._AMAZ_3_/2
TT_CCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._AMAZ_3_/2
TT_CCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._AMAZ_3_/2
TT_CC_X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._RUQ_91
TT_CC_X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GC-03-022-2-11
TTTTCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GC-03-022-2-11
TTTTCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GC-03-022-2-11
TTTTCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GC-03-022-2-11
TTTTCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GC-03-022-2-11
TTTTCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-03-022-2-11
TTTTCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GC-03-022-2-11
TTTTCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-03-022-2-11
TTTTCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-03-022-2-11
TTTTCCAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-03-022-2-11
TTTTCC_X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._RUQ_91
TT_CCAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GC-03-022-2-11
GTTTCCAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GC-03-022-2-11
GTTTCCAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GC-03-022-2-11
GTTTCCAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GC-03-022-2-11
GTTTCCAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._AMAZ_3_/2
GT_CCAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._AMAZ_3_/2
GT_CCAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._AMAZ_3_/2
GT_CCAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._AMAZ_3_/2
GT_CCAGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._RUQ_91
AAAAGGAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: AMAZ_3_/2 RUQ_91

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._AMAZ_3_/2

identical
19 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P97 225
 Dapeng Zhang, 2016

2._AMAZ_3_/2

identical
18 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 8
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

3._AMAZ_3_/2

identical
18 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 9
 Dapeng Zhang, 2016

4._AMAZ_3_/2

identical
18 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 12
 Dapeng Zhang, 2016

5._AMAZ_3_/2

identical
18 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 13
 Dapeng Zhang, 2016

6._AMAZ_3_/2

identical
18 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 15
 Dapeng Zhang, 2016

7._AMAZ_3_/2

identical
18 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 1 > FP
 Dapeng Zhang, 2016

8._AMAZ_3_/2

identical
18 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 14 > F
 Dapeng Zhang, 2016

9._AMAZ_3_/2

identical
18 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 5 > FP
 Dapeng Zhang, 2016

10._AMAZ_3_/2

identical
17 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 7
 Dapeng Zhang, 2016

11._AMAZ_3_/2

identical
17 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 16
 Dapeng Zhang, 2016

12._AMAZ_3_/2 RUQ_91

identical
11 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

13._AMAZ_3_/2 GC-03-022-2-11

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

14._AMAZ_3_/2 GC-03-022-2-11

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP2
 Mars, 2018

15._AMAZ_3_/2 GC-03-022-2-11

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

16._AMAZ_3_/2 GC-03-022-2-11

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

17._AMAZ_3_/2 GC-03-022-2-11

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

18._AMAZ_3_/2 GC-03-022-2-11

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

19._AMAZ_3_/2 GC-03-022-2-11

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

20._AMAZ_3_/2 GC-03-022-2-11

96.8 %
31 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

21._AMAZ_3_/2 GC-03-022-2-11

96.7 %
30 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

22._AMAZ_3_/2 GC-03-022-2-11

96.7 %
30 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

23._AMAZ_3_/2 RUQ_91

94.7 %
19 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

24._AMAZ_3_/2 GC-03-022-2-11

65.6 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

25._AMAZ_3_/2 GC-03-022-2-11

65.6 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

26._AMAZ_3_/2 GC-03-022-2-11

65.6 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

27._AMAZ_3_/2 GC-03-022-2-11

65.6 %
32 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

28._AMAZ_3_/2

52.6 %
19 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 10
 Dapeng Zhang, 2016

29._AMAZ_3_/2

52.6 %
19 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

30._AMAZ_3_/2

52.6 %
19 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 4
 Dapeng Zhang, 2016

31._AMAZ_3_/2

52.6 %
19 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3211 3 > FP
 Dapeng Zhang, 2016

32._AMAZ_3_/2 RUQ_91

46.4 %
28 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP329
11TcSNP364 12TcSNP372 13TcSNP529 14TcSNP534 15TcSNP577
16TcSNP591 17TcSNP602 18TcSNP619 19TcSNP702 20TcSNP723
21TcSNP799 22TcSNP878 23TcSNP891 24TcSNP998 25TcSNP1060
26TcSNP1063 27TcSNP1111 28TcSNP1126 29TcSNP1253 30TcSNP1309
31TcSNP1458 32TcSNP1484